Biofilms and auxin (oxIAA) research

did:plc:ldhmrwmfy3ufsozxlqpjph5d · 2025-10-14T04:21:06.000Z

Small-scale biogeography of biofilms and its implications for sequencing-based studies https://www.biorxiv.org/content/10.1101/2025.10.13.682146v1

Two threads: one on small-scale biogeography of biofilms and implications for sequencing-based / single-cell studies (biorxiv link), and one on auxin catabolism where cytosolic and membrane-bound DAO enzymes regulate auxin and oxidized product oxIAA acts as a described “anti-auxin” (HelixBrief thread and full analysis link).

Created 169 days ago • 56 documents • Range: 10/14/25 4:21am – 10/14/25 8:52am

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10/14/25, 08:52 AM
paper link: www.esann.org/sites/defaul...
https://www.esann.org/sites/defaul...
10/14/25, 08:50 AM
articleproductions.com/primebiome-r...
10/14/25, 08:50 AM
This study evaluated the immunomodulatory and microbiome-regulating effects of Lactobacillus plantarum, Bacillus subtilis, and their combination in Micropterus salmoides (largemouth bass).
10/14/25, 08:26 AM
A Nature Genetics study using our metabolic data from half a million @ukbiobank.bsky.social samples revealed how our genes shape metabolism. Here’s how the study’s lead author summed up the collaboration:
10/14/25, 08:23 AM
Drosophila proteasome subunit Rpn8 controls IMD pathway activation via PGRP-SC2 degradation #Drosophila
10/14/25, 08:15 AM
A Population-scale Single-cell Spatial Transcriptomic Atlas of the Human Cortex https://www.biorxiv.org/content/10.1101/2025.10.13.681959v1
https://www.biorxiv.org/content/10.1101/2025.10.13.681959v1
10/14/25, 08:15 AM
Hippocampal transformations occur along dimensions of memory interference https://www.biorxiv.org/content/10.1101/2025.10.13.682242v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682242v1
10/14/25, 08:15 AM
Hippocampal transformations occur along dimensions of memory interference https://www.biorxiv.org/content/10.1101/2025.10.13.682242v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682242v1
10/14/25, 08:15 AM
Distinct neocortical and entorhinal networks for time, space, and reward https://www.biorxiv.org/content/10.1101/2025.10.13.682150v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682150v1
10/14/25, 08:09 AM
🧬 Blocking cancer growth safely New drugs that stop a key protein link in cancer cells slowed tumour growth in mice with RAS or HER2 mutations, without harming blood sugar control. 🔗 www.science.org/doi/10.1126/... #Cancer #SciComm 🧪
https://www.science.org/doi/10.1126/...
10/14/25, 08:02 AM
A bit more thankfulness on the @ropensci.org blog! 🥳 "Recognition Beyond Blog Post Authors" ropensci.org/blog/2025/10... A post by @yabellini.bsky.social & me, edited by Steffi LaZerte. 🙏
10/14/25, 08:01 AM
Single-cell analysis sits at the intersection of ML and biology. Advances in microfluidic technology have transformed data collection, creating large, tabular datasets well suited to ML methods. 🧵 hubs.la/Q03Nq4xz0
10/14/25, 07:59 AM
In her recent Conversation, Lauren O'Connell discusses the biology of poison frogs including how they get their incredible toxicity and the amazing way these frogs take care of their tadpoles journals.biologists.com/jeb/article/...
10/14/25, 07:56 AM
Epigenetics Update - Early-life ketone body signalling promotes beige fat biogenesis through changes in histone acetylome and β-hydroxybutyrylome go.nature.com/3IDbokZ #Epigenetics #Metabolism #Chromtin --- Gain deeper insights into gene regulation with epigenometech.com
10/14/25, 07:53 AM
biochartoday.com/news/enhanci...
10/14/25, 07:52 AM
T cell cholesterol transport links intestinal immune responses to dietary lipid absorption | Science www.science.org/doi/10.1126/...
https://www.science.org/doi/10.1126/...
Uncover the secret life of auxin: Cytosolic and membrane-bound DAO enzymes precisely regulate auxin levels, and their ox...
"Uncover the secret life of auxin: Cytosolic and membrane-bound DAO enzymes precisely regulate auxin levels, and their oxidized product, oxIAA, acts as a subtle "anti-auxin" to fine-tune p... 🧵 Thread below Full analysis: https://helixbrief.com/article/15eaa963-beb9-4462-8aff-d54ba58dbdad"
10/14/25, 07:49 AM
This study investigates the mechanisms behind auxin catabolism and the role of oxidized auxin (oxIAA) in plant growth.
10/14/25, 07:49 AM
Uncover the secret life of auxin: Cytosolic and membrane-bound DAO enzymes precisely regulate auxin levels, and their oxidized product, oxIAA, acts as a subtle "anti-auxin" to fine-tune p... 🧵 Thread below Full analysis: https://helixbrief.com/article/15eaa963-beb9-4462-8aff-d54ba58dbdad
https://helixbrief.com/article/15eaa963-beb9-4462-8aff-d54ba58dbdad
10/14/25, 07:49 AM
elifesciences.org/articles/104...
10/14/25, 07:47 AM
MAPL regulates gasdermin-mediated release of mtDNA from lysosomes to drive pyroptotic cell death www.nature.com/articles/s41...
https://www.nature.com/articles/s41...
10/14/25, 07:43 AM
Inflammatory and Immunological Basis of Periodontal Diseases. G Baima et al. J Periodontal Res 2025 Oct 9 shorturl.at/hsoqb …extensive excellent narrative review
10/14/25, 07:15 AM
🔍 PARP inhibitors in advanced prostate cancer @tamedoncol.bsky.social ✅ Effective in HRR-deficient mCRPC 🔗 Promising combos with ARSi, radiation, chemo & more 📘 Future directions explored Read the review 👉 buff.ly/FPovbjB #ProstateCancer #PARPi #Oncology
10/14/25, 07:13 AM
Great work from our lab (Zhang Cheng-Cai’s group at IHB-CAS) uncovering how carbon metabolism shapes FtsZ levels and cell division in Anabaena PCC 7120. Communications Biology @commsbio.nature.com : www.nature.com/articles/s42...
https://www.nature.com/articles/s42...
10/14/25, 07:10 AM
“GlycoRNAs are abundant in glioma and involved in glioma cell proliferation” 🔵 Lin Wang latest research is now available to read in #Oncogenesis. ▶️ Read the full open access article here: www.nature.com/articles/s41...
https://www.nature.com/articles/s41...
10/14/25, 07:02 AM
A single session of mild intensity physical exercise modulates brain oscillations in healthy young adults: a pilot study. #NeuroDegeneration 🧪🧠 https://www.biorxiv.org/content/10.1101/2025.10.10.681596v1
https://www.biorxiv.org/content/10.1101/2025.10.10.681596v1
10/14/25, 07:02 AM
Evaluating MRI-Confirmed Relapses as a Novel Primary Endpoint in Multiple Sclerosis Trials #NeuroDegeneration 🧪🧠 http://medrxiv.org/cgi/content/short/2025.10.10.25337738v1
http://medrxiv.org/cgi/content/short/2025.10.10.25337738v1
10/14/25, 07:01 AM
Small-scale biogeography of biofilms and its implications for sequencing-based studies #SingleCell 🧪🧬🖥️ https://www.biorxiv.org/content/10.1101/2025.10.13.682146v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682146v1
10/14/25, 07:01 AM
A single-cell genetic colocalization test improves power and resolves disease-mediating cell types #SingleCell 🧪🧬🖥️ https://www.biorxiv.org/content/10.1101/2025.10.10.681685v1
https://www.biorxiv.org/content/10.1101/2025.10.10.681685v1
10/14/25, 07:00 AM
The authors included RRIDs in their paper! We value the author's support of reproducibility. #OpenScience #accelerateopenscience #RRID
10/14/25, 07:00 AM
The authors included RRIDs in their paper! Thanks for making your methods matter! #ReproducibleResearch #methodsmatter #OpenScience
10/14/25, 07:00 AM
RRIDs were included in this paper. Thanks for making your methods matter! #reproducibility #RRID #methodsmatter
10/14/25, 06:57 AM
Source: www.nature.com/articles/s41...
https://www.nature.com/articles/s41...
10/14/25, 06:56 AM
Children's National Hospital receives $8 million grant from Gilbert Family Foundation to advance neurofibromatosis research - The Manila Times
10/14/25, 06:52 AM
www.biorxiv.org/content/10.1... #microsky #phagesky #phage
https://www.biorxiv.org/content/10.1...
10/14/25, 06:34 AM
Bacterially grown living materials with resistant and on-demand functionality Science Advances www.science.org/doi/10.1126/...
https://www.science.org/doi/10.1126/...
10/14/25, 06:30 AM
Loss-of-function variants in ciliary genes confer high risk for tetralogy of Fallot Science Advances www.science.org/doi/10.1126/...
https://www.science.org/doi/10.1126/...
10/14/25, 06:25 AM
Congrats. I also worked on the analysis and develop a model that takes all the concentration of any variables collected such as height, depth, associated variables and then model them with the metabolic measure and extract sub clusters and then compare them, applied to any microbes.
10/14/25, 06:21 AM
Science can still be cool. Wow! interestingengineering.com/science/chin...
10/14/25, 06:19 AM
www.futura-sciences.com/sciences/act...
https://www.futura-sciences.com/sciences/act...
10/14/25, 06:17 AM
🎉🆕📰🎉: Morphological and developmental analysis of Plantago spp. seed capsules reveals key features of the dehiscence zones doi.org/10.1093/aob/...
10/14/25, 06:11 AM
www.pnas.org/doi/10.1073/...
https://www.pnas.org/doi/10.1073/...
10/14/25, 06:09 AM
Optimization of the medium and culture conditions, combined with a multicopy expression strategy, achieved a remarkable enzyme production of 797 U/mL in flask culture.
10/14/25, 05:53 AM
Comparative analysis of immunomodulatory biomarker responses in clams Meretrix meretrix and Mactra veneriformis to waterborne cadmium exposure - @frontiersin.bsky.social Marine Science www.frontiersin.org/journals/mar...
https://www.frontiersin.org/journals/mar...
10/14/25, 05:49 AM
Proud of Lizandro Rivera-Rangel and @drjanina.bsky.social from the lab presenting on how the #HCV RNA 5’ FAD cap leads to evasion of translational repression at #HCVFlavi2025 in Singapore 👏🏻
10/14/25, 05:33 AM
Done, thanks in advance! However, you should also consider posting a freely accessible version. This journal allows you to do that for the "Accepted Manuscript" version (on a personal webpage, no embargo - see the link for "Integrative And Comparative Biology" at academic.oup.com/pages/open-r... )
10/14/25, 05:16 AM
🚨 NEW PUBLICATION 🚨 Congratulations to Binodh, A. K.,et al, on their new publication in Science Direct. Genotypic Technology is proud to have provided the genomics services that contributed to this research. 750+ Publications | 30+ Patents | 50+ Products 📧 genomics@genotypic.co.in
10/14/25, 05:13 AM
www.nature.com/articles/s41... #sunbio
https://www.nature.com/articles/s41...
10/14/25, 04:56 AM
DupyliCate - mining, classifying, and characterizing gene duplications doi.org/10.1101/2025... #Bioinformatics #Python #Evolution #Genomics
10/14/25, 04:53 AM
than the maximum line (MAX) Place on specimen... https://www.yongchieng.com/en-us/medicine/334
https://www.yongchieng.com/en-us/medicine/334
I really need clarification here and some sources. Also don’t masks simply prevent YOU from spreading the virus? Please...
10/14/25, 04:53 AM
www.nature.com/articles/s41...
https://www.nature.com/articles/s41...
10/14/25, 04:36 AM
I can just keep providing links for anyone still curious about what Facilities actually needs to consider when designating use of space: pmc.ncbi.nlm.nih.gov/articles/PMC...
10/14/25, 04:33 AM
On the overlap of transcription factor binding and regulatory targets: functional and regulatory coherence of top-bound targets is masked by weakly bound ones https://www.biorxiv.org/content/10.1101/2025.10.12.681120v1
https://www.biorxiv.org/content/10.1101/2025.10.12.681120v1
10/14/25, 04:33 AM
Chromosomal genome assemblies of Antarctic Notothenia coriiceps and temperate relative Paranotothenia angustata https://www.biorxiv.org/content/10.1101/2025.10.11.681823v1
https://www.biorxiv.org/content/10.1101/2025.10.11.681823v1
10/14/25, 04:24 AM
Oxidative stress sensing by the translation elongation machinery promotes production of detoxifying selenoproteins https://www.biorxiv.org/content/10.1101/2025.10.13.682107v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682107v1
10/14/25, 04:21 AM
A protocol for chemical competence in phytopathogenic Ralstonia https://www.biorxiv.org/content/10.1101/2025.10.13.678364v1
https://www.biorxiv.org/content/10.1101/2025.10.13.678364v1
10/14/25, 04:21 AM
Small-scale biogeography of biofilms and its implications for sequencing-based studies https://www.biorxiv.org/content/10.1101/2025.10.13.682146v1
https://www.biorxiv.org/content/10.1101/2025.10.13.682146v1

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Biofilms and auxin (oxIAA) research